My mom has been gluten-free for years, so anytime we get together for birthdays, these Almond Flour Cupcakes are a must! They’re perfectly light and fluffy with the right cupcake texture, and I love topping them with homemade frosting (and sometimes sprinkles for the kids). If you’ve been searching for the best gluten-free cupcake recipe, these are SO good!
You’ll Also Love: Vegan Lemon Blueberry Cake

What is Almond Flour?
Almond flour is simply almonds that have been blanched (skins removed) and ground into a fine, soft flour. It’s naturally gluten-free and grain-free, but it can also add flavor and texture to baked goods. Instead of the neutral taste of all-purpose flour, almond flour adds a light nuttiness and a richness that makes cupcakes extra soft and moist!
Almond flour is also a little more nutrient-dense than regular flour, with healthy fats, protein, and vitamin E packed into every bite. I love it for recipes like these cupcakes because it keeps them tender for days and gives them that bakery-style texture without any fuss. You can usually find almond flour in the baking aisle or gluten-free section of most grocery stores, and it’s an easy swap in so many dessert recipes.
Ingredients for Almond Flour Cupcakes
These cupcakes are another great gluten-free baking recipe that calls for ingredients you likely have in your pantry! So when the craving for a cupcake (or two) hits, whip up a batch of these fluffy almond flour cupcakes and bring joy to your tastebuds.
- Eggs
- Butter or coconut oil melted
- Plain Greek yogurt – Greek yogurt contributes to the moist and fluffy texture of these tasty cupcakes.
- Honey – A natural sweetener that adds just the right amount of sweetness!
- Almond flour/Tapioca starch
- Baking powder/Salt/Granulated sugar
- Vanilla extract
- Frosting – You can choose your favorite healthy store-bought frosting, or make your own.

How to Make Gluten Free Cupcakes
Make a single batch of this cupcake recipe for the family or a double for a party! Either way, these almond flour cupcakes are a simple, sweet recipe.
- Preheat the oven to 350 Fahrenheit.
- Line a 12-cavity cupcake pan or muffin tin with cupcake liners and set aside.
- In a large mixing bowl or stand mixer, whisk together the wet ingredients: eggs, coconut oil or butter, sugar, greek yogurt, honey, and vanilla.
- Beat in the dry ingredients: almond flour, tapioca, baking powder, and salt until smooth.
- Scoop the batter into the prepared cupcake tray, filling each about ⅔ to ¾ of the way up.
- Bake for 18-24 minutes or until a toothpick comes out clean.
- Let cool in the tray for 15 minutes, then transfer to a wire rack to finish cooling.
- Once cool, frost & enjoy!
TIP: Cream cheese frosting, buttercream frosting, or even just a little whipped cream are all great topping options for these cupcakes!




Serving Suggestions for Almond Flour Cupcakes
Keep these simple or dress them up. No matter how you make them, they’re so good! Here’s how to serve Almond Flour Cupcakes:
- With fresh berries and whipped cream – A light, refreshing topping that pairs beautifully with the nutty flavor.
- Frosted with cream cheese or buttercream – Perfect for birthdays, showers, or just because.
- Drizzled with melted dark chocolate – Adds a decadent touch without going overboard.
- Alongside a hot latte or tea – The perfect mid-afternoon pick-me-up.
- As part of a dessert board – Pair them with chocolate-dipped fruit, cookies, and small candies for a fun party spread.
How to Store Almond Flour Cupcakes
Let the cupcakes cool completely, then store them in an airtight container at room temperature for 2-3 days. They can also be stored in the refrigerator for 3-5 days.
How to Freeze Cupcakes Made With Almond Flour
Almond Flour Cupcakes can also be frozen for later. To freeze, simply make a batch of these cupcakes and let them cool completely. Store them in a freezer-safe container for about 1 hour in the fridge, then move them to the freezer for up to 3 months! When ready to enjoy, let them thaw in the refrigerator overnight and add icing the next day.

More Healthy Treats to Satisfy Your Sweet Tooth
- Healthy Rice Krispie Treats
- Baked Glazed Doughnuts
- Healthy Chocolate Cake
- Gluten-Free Healthy Rhubarb Muffins
- Strawberry Lemonade Cupcakes
Did you make this recipe? Be sure to give it a rating below and tag your photos @jar.of.lemons!
Almond Flour Cupcakes
Ingredients
- 3 large eggs
- 1/4 cup butter or coconut oil, melted
- 1/2 cup granulated sugar (or coconut sugar)
- 1/4 cup plain Greek yogurt
- 2 Tablespoons honey
- 1 Tablespoon vanilla
- 2 cups almond flour
- 2 1/2 Tablespoons tapioca starch
- 1 1/2 teaspoons baking powder
- 1/4 teaspoon salt
- 1-2 cups frosting (optional, to taste)
Instructions
- Preheat the oven to 350 Fahrenheit.
- Line a 12-cavity cupcake tray with liners and set aside.
- In a mixing bowl or bowl of a stand mixer, beat together the eggs, coconut oil or butter, sugar, greek yogurt, honey, and vanilla.
- Beat in the almond flour, tapioca, baking powder, and salt until smooth.
- Scoop into the prepared cupcake tray, filling each about 2/3 to 3/4 of the way up.
- Bake for 18-24 minutes (or until a toothpick comes out clean).
- Let cool in the tray for 15 minutes, then transfer to a wire rack to finish cooling.
- Once cooled, frost & enjoy!
Video
Notes
- Let the cupcakes cool completely, then store them in an airtight container at room temperature for 2-3 days. They can also be stored in the refrigerator for 3-5 days.
- To freeze, simply make a batch of these cupcakes and let them cool completely. Store them in a freezer-safe container for about 1 hour in the fridge, then move them to the freezer for up to 3 months! When ready to enjoy, let them thaw in the refrigerator overnight and add icing the next day.

Gena says:
These cupcakes turned out so moist and fluffy, you wouldn’t even guess they’re gluten-free. They’re simple to make and perfect for any occasion.
JOL Team replied:
So glad you loved them!
Lilly says:
I’m in love with these almond cupcakes! Usually I’m not a fan of vanilla cupcakes, as they feel a little boring and just…uhm…empty? But the flavor and nutrition of the almond flour really level them up! This one is a keeper.
JOL Team replied:
Thank you so much for the kind words! Glad you loved them!
Gail says:
I was looking for a gluten-free option that didn’t taste dry, and these were a total win. They’re super light and fluffy.
JOL Team replied:
Thank you so much for sharing Gail!
Kim says:
These turned out so good! No one would even guess they were gluten free!
JOL Team replied:
Glad you loved them Kim!