Gluten-Free Baked Mac & Cheese Recipe
Made with gluten-free elbows (or any pasta of choice), three different types of cheese, and a crunchy parmesan breadcrumb topping that takes things to another level, I could not be more obsessed with this creamy mac and cheese recipe. Even my kids love it!
It’s easy enough to make as a busy weeknight side dish, while still tasting impressive enough for gatherings with friends or even the holidays. And after years of testing this recipe, I can honestly say it’s perfect!

Ingredients for Gluten Free Macaroni and Cheese
Shells and Sauce
- Gluten-Free Elbows – Penne, shells, or bowtie pasta works great, too!
- Butter
- Gluten-Free All-Purpose Flour
- Milk – Plant-based alternatives work too, but you want to make sure that the milk is thick and creamy. Regular milk or whole milk works best, but creamy oat milk or cashew milk (unflavored and unsweetened) are also great options.
- Sharp Cheddar Cheese
- Shredded Mozzarella
- Parmesan Cheese – Grated is best.
- Garlic Powder
- Salt/Pepper
Topping
- Gluten-Free Breadcrumbs – or crushed gluten-free crackers.
- Parmesan Cheese
- Optional: Add freshly chopped parsley, basil, or even sage leaves as garnish!

Gluten Free Mac n Cheese Substitutions
Maybe you care about this, maybe you don’t. But I often get asked about what type of alternative ingredients I use! So if you’re interested, here are some of my favorite gluten-free pasta options:
- Barilla Gluten-Free Elbows – Great for an everyday option!
- Banza Chickpea Pasta – Higher in protein AND gluten-free.
- Whole Foods 365 Brand Pasta – Made from corn and rice, this brand is actually really good for most recipes.
How to Make Baked Mac and Cheese
It is truly SO easy to make this Gluten-Free Mac & Cheese recipe! All you need is a pot to boil the pasta, a saucepan for the cheese sauce, and a baking dish or casserole dish. Here’s how to put it together in 7 simple steps:
- Cook the gluten-free pasta according to package directions.
- While the pasta cooks, melt the butter in a saucepan.
- Whisk in the gluten-free flour, then slowly pour in the milk and seasoning.
- Let simmer over medium heat to thicken the sauce.
- Remove from heat and add in the three types of cheeses.
- Add the pasta back in to the mixture, stir, then pour into a baking dish or casserole dish.
- Top with parmesan and breadcrumbs, then bake at 400 degrees F. for 20-25 minutes!
Tip: feel free to mix in shredded rotisserie chicken or cooked ground turkey before baking for added protein!




How to Make Ahead of Time
Yes, you can absolutely make this Gluten-Free Baked Mac & Cheese ahead of time! Simply make the recipe according to the instructions below, then cover and refrigerate overnight. When ready, add the parmesan breadcrumb topping and bake!

Gluten Free Mac and Cheese Serving Suggestions
Here’s what to serve this recipe with for the best meal:
- Garlic Green Beans – Light and crisp to balance out the richness.
- Easy Roasted Carrots
- Simple Garden Salad – Adds a fresh crunch and a pop of color.
- Crispy Air Fryer Zucchini
- Roasted Broccoli or Brussels Sprouts – The perfect savory side!
- Honey Balsamic Chicken – For a protein-packed main dish alongside mac and cheese that pairs so well.
How to Store Gluten Free Macaroni and Cheese
Store any leftovers in an airtight container in the refrigerator for up to 4-5 days! This recipe can also be frozen for later. Let cool in the fridge, then move the container to the freezer and store for up to 3 months. Reheat in the microwave for a minute or two, stirring often until evenly warm!
More Gluten-Free Dinner Recipes
- Chicken & Rice Stuffed Peppers
- 4-Ingredient Potato Soup
- Gluten-Free Chicken Pot Pie Casserole
- Mushroom Cauliflower Pizza
- Gluten-Free Chicken & Dumplings
Sign up for my email list to get my FREE 7 Meal-Planning Secrets To Making Wholesome Dinners (In 30 Minutes Or Less) course!
Gluten Free Mac and Cheese Recipe FAQs
Absolutely! Feel free to mix things up with gruyère, fontina, gouda, or even pepper jack for a little kick. Just make sure to use cheeses that melt well for that ultra-creamy texture.
The key is to cook the pasta just until al dente, then immediately rinse it under cold water to stop the cooking process. This keeps it firm and prevents it from overcooking once baked with the cheese sauce!
Gluten Free Baked Mac and Cheese
Equipment
Ingredients
- 16 ounces gluten-free elbows
- 1/4 cup butter
- 1/4 cup gluten-free all-purpose flour
- 3 cups milk
- 3 cups sharp cheddar cheese
- 1 1/2 cup shredded mozzarella
- 1/3 cup parmesan cheese
- 1 teaspoon garlic powder
- 1 teaspoon salt
- 1/4 teaspoon pepper
Topping
- 1/3 cup gluten-free breadcrumbs or crushed crackers
- 1/3 cup parmesan cheese
Instructions
- Bring a large pot of salted water to a boil and cook pasta according to package instructions.
- Preheat the oven to 400 Fahrenheit.
- Meanwhile, melt the butter in a sauce pan.
- Whisk in the flour until smooth.
- Slowly pour in the milk, then add in the salt, pepper, garlic powder.
- Simmer over low heat until the milk starts to thicken, whisking regularly.
- Remove from the heat and whisk in the cheeses until melted.
- Combine the sauce with the pasta and stir to combine.
- Transfer to a baking dish, top with breadcrumbs and extra parmesan.
- Bake for 20-25 minutes or until the top is golden brown.
- Serve immediately and enjoy!

Amy says:
Great recipe! Especially if you use a high quality cheddar. Only one thing I would do differently…skip the baking step! We found baking it dried it out and it was much creamier before baking
Jar Of Lemons replied:
I’m glad you enjoyed this recipe, Amy. Thanks for the review!
Eileen says:
I made this recipe for my family and we all thought it was delicious! I used shredded Parmesan cheese in the dish, but then used grated parmesan on top.
Jar Of Lemons replied:
Sounds delicious! I’m glad you enjoyed this recipe. 🙂
diego says:
Good, quick, tasty! Will definitely add to Friday rotation. The gluten eaters did not ask if it was GF. Added worsteshier sauce and Coleman’s mustard to kick up the flavor a little
Jar Of Lemons replied:
Thanks, Diego! I’m glad you enjoyed this recipe!
Preet says:
Is it possible to use regular macaroni rather than gluten free? Would soy milk work? Looking forward to trying this!
Christine McMichael replied:
Yes, absolutely! And soy milk will work great 🙂 Just make sure it’s unsweetened and unflavored!
Jennifer says:
Absolutely delicious!! I used fontina instead of mozzarella, and chickpea pasta. Tastes even better than it looks (and it looks great!)! Thank you!
Jar Of Lemons replied:
So glad you enjoyed this recipe, Jennifer! Thanks for making it and leaving a review. 🙂
Irina says:
Love mac & cheese in any form. This gluten-free mac & cheese looks so delicious. Thanks for sharing!