High-Protein Cottage Cheese Pumpkin Cheesecake
If you follow me over on Instagram, you already know how much I love making fall desserts that are a bit higher in protein. AND you know that I am a pumpkin fanatic (hello, creamy pumpkin pie)! So, I figured, why not try to combine the two to create the ultimate dessert? And oh my goodness, you guys! The results turned out SO much better than I could have ever guessed.
The cheesecake is sweet without being overly sweet. The topping is so good I could eat it on its own by the spoonful, the filling is perfectly soft with a spiced pumpkin flavor, and the crust is made with a hint of maple syrup that ties everything together. Plus, it’s naturally sweetened and higher in protein than classic pumpkin cheesecake. Every bite is so good!
RELATED: Vegan Butterfinger Cheesecake
Why You’ll Love This Recipe
- Healthy Cheesecake – Unlike most cheesecake recipes, this pumpkin cottage cheese cheesecake is completely refined sugar-free. Plus, it provides some healthy fats and fiber from the almond flour and 10 grams of protein thanks to the cottage cheese!
- Simple Ingredients – If you’ve never made cheesecake, you’ll be shocked at how simple the ingredients are. You probably already have most of what you need on hand.
- Easy Recipe – If you don’t often make cheesecakes, they can be a bit intimidating. However, this recipe is SO incredibly easy to put together!
- Serves a Crowd – This recipe makes one large cheesecake that feeds up to 12 people, which is perfect for holidays and family gatherings.
- Make Ahead – I like to prep my cheesecake a day or so ahead of time. Then, all I have to do is slice and serve when I’m ready to eat. It’s especially helpful when I’m running around the kitchen trying to finish my Red Wine Cranberry Sauce and Roasted Brussels Sprouts on Thanksgiving!
You’ll Also Love: Honey Pear Ginger Cheesecake

Ingredients
Crust
- Flour – A combination of all-purpose flour and almond flour forms the base of the crust, adding a slightly nutty taste.
- Salt – This enhances the flavor of the crust, balancing the sweetness.
- Maple Syrup – Substitute honey if preferred here.
- Coconut Oil – Melt the oil before combining the ingredients. Butter works great, too!
- Water – Use as needed if the dough is too crumbly.
Cheesecake Filling
- Cottage Cheese – Full-fat works best for a traditional cheesecake flavor and texture.
- Maple Syrup
- Pumpkin Pie Spice – Adjust to taste.
- Pumpkin Puree – Make sure to use pure pumpkin puree. The only ingredient on the can should be pumpkin! Pumpkin pie filling has added sugar and sweeteners.
- Tapioca Starch – This thickens the filling and helps it set. Cornstarch is a great substitution!
- Vanilla
- Eggs – Cold or room temp is fine! I don’t recommend using a flax egg or egg replacer for the filling. It will likely make the filling too dense.
Cottage Cheese “Sour Cream” Topping
- Cottage Cheese – Again, full-fat cottage cheese is best. This mimics the tangy flavor of sour cream found in most recipes while adding protein!
- Maple Syrup – Use more or less, depending on how sweet you want your topping.
- Pumpkin Puree
- Milk – Use any kind of milk you have on hand.

How to Make a Cottage Cheese Pumpkin Cheesecake
I know making cheesecakes from scratch can be intimidating, but I promise it’s simple! You’ll need a 9-inch round springform pan, a rimmed baking sheet, a large bowl, a high-speed blender, and about 30 minutes of prep time. Here’s how to make Cottage Cheese Pumpkin Cheesecake:
- Prepare the crust – Mix both flours and salt in a large bowl. Then, add the maple syrup and coconut oil, and mix until a thick dough forms. Transfer the mixture to a prepared springform pan, and press it down into an even layer. Bake until the crust is lightly golden. It won’t be fully cooked! Set aside.
- Blend the filling – Next, blend the cheesecake filling ingredients in a high-speed blender until smooth.
- Bake the filling – Pour the filling mixture evenly over the crust. Bake until set.
- Cool – Turn off the oven, crack the door, and let the cheesecake cool for 30 minutes. Then, transfer it to the counter and let it cool completely. Finally, chill the cheesecake in the fridge for at least 4 hours.
- Make the topping – Blend the “sour cream” topping ingredients in a food processor until smooth.
- Top the cheesecake – Spread the topping evenly over the chilled cheesecake.
- Chill again – If you have time, I highly recommend chilling the cheesecake in the fridge again. This helps it set and prevents cracking!




Tips
- Prevent sticking – Before you begin, grease your springform pan super well with cooking oil spray. Then, line the bottom with parchment paper. Or, you can skip the parchment paper if your pan is nonstick, but I still prefer it just in case.
- Use a baking sheet – I like to place my springform pan on a baking sheet before I begin baking. This makes it super easy to take it in and out of the oven.
- Adjust the crust – If your crust is too crumbly to hold its shape, add water 1 tablespoon at a time until it’s cohesive.
- Have extra topping? – Save it to add to your coffee in the mornings! It makes it SO flavorful, thick, and creamy, kind of like a pumpkin spice latte. Or, freeze it for a high-protein ice cream!
- Cover up cracks – Since this cheesecake isn’t baked in a water bath, it may crack on top. The cottage cheese “sour cream” topping hides it perfectly! (Or, use the water bath method (below) to prevent cracking.
RELATED: Strawberry Cheesecake Bars
Water Bath Method
I skip the water bath for this recipe because it makes the process a lot easier. However, if you want to use it to prevent cracks, follow the steps below:
- Wrap the pan – Place the springform pan on a large sheet of heavy-duty foil. Wrap the outside of the pan tightly with 2-3 layers of foil. This prevents the water from seeping in.
- Prepare the roasting pan – Next, set a large roasting pan (or any deep baking dish) on the middle oven rack. Place the foil-wrapped springform pan on top.
Add hot water – Carefully pour hot water into the roasting pan until it reaches about halfway up the sides of the springform pan. - Bake – Follow the recipe instructions, baking and cooling the cheesecake as usual.

Variations
- Gluten-Free Crust – Replace the all-purpose flour with a 1:1 all-purpose gluten-free flour for a completely gluten-free cheesecake.
- Pre-Made Crust – Use a store-bought crust to speed up the cooking process.
- Chocolate Pumpkin Cheesecake – Add ½ cup melted dark chocolate to the filling before baking for a chocolate-pumpkin cheesecake (or add it to the topping).
- Swirled Cheesecake – Reserve ½ cup of the pumpkin filling, and swirl it into the top of the cheesecake batter before baking for a pretty marbled appearance.
- Nuts – Top the finished cheesecake with chopped pecans or walnuts for added texture and a subtle nutty flavor.
- Sweeter – If you prefer a sweeter dessert, add a drizzle of caramel sauce or honey before serving.
How to Make Clean Cheesecake Slices
- Chill completely – Make sure your cottage cheese pumpkin cheesecake has been refrigerated for at least 4 hours (overnight is best). This will help it hold its shape!
- Use a sharp knife – A thin, sharp chef’s knife or carving knife works best for clean edges.
- Warm the knife – Dip the knife in hot water, then wipe it dry before cutting each slice. This prevents crumbs from sticking.
- Cut with confidence – Use one long, smooth motion instead of sawing back and forth, which will add crumbs to the tops and sides of your slices.
How to Store
Refrigerator: Once cool, transfer leftovers to an airtight container. They will keep fresh for up to 5 days!
Freezer: Wrap the whole cheesecake in plastic wrap, followed by aluminum foil. Or, wrap individual slices with parchment paper, and transfer them to a freezer-safe container. Freeze for up to 2 months.
Serve: Thaw frozen cheesecake in the fridge overnight. Then, enjoy cold!

More Healthy Pumpkin Recipes
- Pumpkin Cottage Cheese Waffles
- Healthy Pumpkin Bread
- Easy Healthy Pumpkin Muffins
- Pumpkin Smoothie Recipe
- Pumpkin Baked Oatmeal
- Pumpkin Protein Pancakes
Cottage Cheese Recipes You’ll Love
- Cottage Cheese Pancakes
- Cottage Cheese Waffles
- Cottage Cheese Brownies
- Cottage Cheese Muffins
- Cottage Cheese Cinnamon Rolls
- Cottage Cheese Pancake Bars
Looking for more? Find 35+ cottage cheese recipes!
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Cottage Cheese Pumpkin Cheesecake
Equipment
- Rimmed Baking Sheet
Ingredients
Crust
- 1 cup all-purpose flour (spooned and leveled)
- 1 cup almond flour
- 1/4 teaspoon salt
- 3 Tablespoons maple syrup
- 5 Tablespoons refined coconut oil (melted)
- 1-2 Tablespoons water
Cheesecake
- 2 cups 4% cottage cheese
- 1/2 cup maple syrup
- 1 15-ounce can pumpkin puree
- 1 1/2 teaspoons pumpkin pie spice
- 1/3 cup tapioca starch (spooned and leveled)
- 1 Tablespoon vanilla extract
- 3 large eggs
Cottage Cheese “Sour Cream” Topping
- 1/2 cup 4% cottage cheese
- 2 Tablespoons maple syrup
- 2 Tablespoons pumpkin puree
- 1 Tablespoon milk of choice
- sprinkle cinnamon (optional)
Instructions
- Preheat the oven to 350°F. Grease a 9-inch round springform pan with cooking spray and line the bottom with parchment paper. Place a rimmed baking sheet underneath the cake pan for easy transport to and from the oven.
- In a large bowl, mix together the all purpose flour, almond flour, and salt. Add the maple syrup and coconut oil and mix until a thick dough forms. Add the water, 1 tablespoon at a time, if the mixture is too crumbly.
- Transfer the mixture to the prepared pan and press down into an even layer.
- Bake for 10 minutes.
- In a blender, combine the cottage cheese, maple syrup, pumpkin puree, pumpkin spice, tapioca starch, vanilla, and eggs and blend until smooth, about 2 minutes.
- Pour the cheesecake mixture over the par-baked crust and bake for 55-60 minutes, or until set.
- Turn off the oven, prop the oven door open and leave in the oven for 30 minutes.
- Remove the cheesecake from the oven and fully cool on the counter (about 45 minutes). Then, refrigerate for 4-6 hours before serving.
- For the topping, blend the cottage cheese, maple syrup, and pumpkin until smooth.
- Spread over the chilled cheesecake and add a sprinkle of cinnamon on top (optional). If time allows, place the cheesecake with topping into the fridge for 1 hour to set a bit more before serving.
Video
Notes
- 1 tablespoon of vanilla extract may sound like a lot, but it isn’t too overpowering at all. It adds so much flavor!
- Eggs can be cold from the fridge or room temperature.
- If you have leftover “sour cream” topping, it’s actually SO good in coffee as a creamer!

Maria says:
can I use sour cream instead of cottage cheese for the topping?
Christine replied:
Absolutely! That would be so good!
Sarah says:
This recipe is absolute genius! It’s like a healthier pumpkin pie to me and I was so happy having a slice daily with my 4 year old daughter. We are both obsessed. I followed the recipe exactly and it was perfectly wonderful.
Jar Of Lemons replied:
So glad you and your daughter enjoy this recipe, Sarah. Thanks for the review!
Brittney says:
Can I make this a day in advance? Then add the topping day of?
Christine McMichael replied:
Yes, definitely!
Grama May says:
What can you use in place of the tapioca starch and almond flour
Christine McMichael replied:
Cornstarch works great in place of tapioca starch, and all-purpose flour is a great substitute for the almond flour. I hope you enjoy the recipe!